SRX9892483
GSM5025486: PBX1 rep1 ChIPseq MM1S; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PBX1

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
PBX1_ChIPseq_MM1S
cell line
MM1S
cell type
Multiple myeloma cell line
treatment
no treatment
antibody
PBX1 (Abnova M01, clone 4A2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra II ChIP-seq Library Prep Master Mix (NEB)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
66062061
Reads aligned (%)
98.7
Duplicates removed (%)
23.4
Number of peaks
33542 (qval < 1E-05)

hg19

Number of total reads
66062061
Reads aligned (%)
97.9
Duplicates removed (%)
24.0
Number of peaks
33484 (qval < 1E-05)

Base call quality data from DBCLS SRA