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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PBX1
wikigenes
PDBj
CellType: MM.1S
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX9892483
GSM5025486: PBX1 rep1 ChIPseq MM1S; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PBX1
Cell type
Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma
Attributes by original data submitter
Sample
source_name
PBX1_ChIPseq_MM1S
cell line
MM1S
cell type
Multiple myeloma cell line
treatment
no treatment
antibody
PBX1 (Abnova M01, clone 4A2)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra II ChIP-seq Library Prep Master Mix (NEB)
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
66062061
Reads aligned (%)
98.7
Duplicates removed (%)
23.4
Number of peaks
33542 (qval < 1E-05)
hg19
Number of total reads
66062061
Reads aligned (%)
97.9
Duplicates removed (%)
24.0
Number of peaks
33484 (qval < 1E-05)
Base call quality data from
DBCLS SRA